The plot's moving kind of slowly right now, but it's important to work through these little things before the plot at large can be addressed.
After re-reading my own archives, I just continue to stumble upon loose ends, plotholes, etc. which all need addressing. But some of them are in the abandoned Majora's Mask parody, so I can't think of a clever way to handle them.
Also; DAMN but Ruby looks short. She's the same height as everyone else, but her jumper drags down a little so she looks like she has freakishly short legs.